Bardet AF, He Q, Zeitlinger J, Stark A. A computational pipeline for comparative ChIP-seq analyses. Nat Protoc. 2011 Dec 15;7(1):45-61.

• Test dataset
  chip_dmel.fastq.gz [288 Mb]
  input_dmel.fastq.gz [361 Mb]
  chip_dyak.fastq.gz [361 Mb]
  input_dyak.fastq.gz [556 Mb]

• Example code
  comparative_chip_bardet_natprotoc_2011.sh [14 Kb]

• Additional code
  correlation.awk [1 Kb]